By the end of this section, you will be able to:
- Symbolize the composition of molecules using molecular formulas and empirical formulas
- Represent the bonding arrangement of atoms within molecules using structural formulas
- Define the amount unit mole and the related quantity Avogadro's number
- Explain the relation between mass, moles, and numbers of atoms or molecules and perform calculations deriving these quantities from one another
Molecular and Empirical Formulas
A molecular formula is a representation of a molecule that uses chemical symbols to indicate the types of atoms followed by subscripts to show the number of atoms of each type in the molecule. (A subscript is used only when more than one atom of a given type is present.) Molecular formulas are also used as abbreviations for the names of compounds.
The structural formula for a compound gives the same information as its molecular formula (the types and numbers of atoms in the molecule) but also shows how the atoms are connected in the molecule. The structural formula for methane contains symbols for one C atom and four H atoms, indicating the number of atoms in the molecule (Figure 2.16). The lines represent bonds that hold the atoms together. (A chemical bond is an attraction between atoms or ions that holds them together in a molecule or a crystal.) We will discuss chemical bonds and see how to predict the arrangement of atoms in a molecule later. For now, simply know that the lines are an indication of how the atoms are connected in a molecule. A ball-and-stick model shows the geometric arrangement of the atoms with atomic sizes not to scale, and a space-filling model shows the relative sizes of the atoms.
Although many elements consist of discrete, individual atoms, some exist as molecules made up of two or more atoms of the element chemically bonded together. For example, most samples of the elements hydrogen, oxygen, and nitrogen are composed of molecules that contain two atoms each (called diatomic molecules) and thus have the molecular formulas H2, O2, and N2, respectively. Other elements commonly found as diatomic molecules are fluorine (F2), chlorine (Cl2), bromine (Br2), and iodine (I2). The most common form of the element sulfur is composed of molecules that consist of eight atoms of sulfur; its molecular formula is S8 (Figure 2.17).
It is important to note that a subscript following a symbol and a number in front of a symbol do not represent the same thing; for example, H2 and 2H represent distinctly different species. H2 is a molecular formula; it represents a diatomic molecule of hydrogen, consisting of two atoms of the element that are chemically bonded together. The expression 2H, on the other hand, indicates two separate hydrogen atoms that are not combined as a unit. The expression 2H2 represents two molecules of diatomic hydrogen (Figure 2.18).
Compounds are formed when two or more elements chemically combine, resulting in the formation of bonds. For example, hydrogen and oxygen can react to form water, and sodium and chlorine can react to form table salt. We sometimes describe the composition of these compounds with an empirical formula, which indicates the types of atoms present and the simplest whole-number ratio of the number of atoms (or ions) in the compound. For example, titanium dioxide (used as pigment in white paint and in the thick, white, blocking type of sunscreen) has an empirical formula of TiO2. This identifies the elements titanium (Ti) and oxygen (O) as the constituents of titanium dioxide, and indicates the presence of twice as many atoms of the element oxygen as atoms of the element titanium (Figure 2.19).
As discussed previously, we can describe a compound with a molecular formula, in which the subscripts indicate the actual numbers of atoms of each element in a molecule of the compound. In many cases, the molecular formula of a substance is derived from experimental determination of both its empirical formula and its molecular mass (the sum of atomic masses for all atoms composing the molecule). For example, it can be determined experimentally that benzene contains two elements, carbon (C) and hydrogen (H), and that for every carbon atom in benzene, there is one hydrogen atom. Thus, the empirical formula is CH. An experimental determination of the molecular mass reveals that a molecule of benzene contains six carbon atoms and six hydrogen atoms, so the molecular formula for benzene is C6H6 (Figure 2.20).
If we know a compound’s formula, we can easily determine the empirical formula. (This is somewhat of an academic exercise; the reverse chronology is generally followed in actual practice.) For example, the molecular formula for acetic acid, the component that gives vinegar its sharp taste, is C2H4O2. This formula indicates that a molecule of acetic acid (Figure 2.21) contains two carbon atoms, four hydrogen atoms, and two oxygen atoms. The ratio of atoms is 2:4:2. Dividing by the lowest common denominator (2) gives the simplest, whole-number ratio of atoms, 1:2:1, so the empirical formula is CH2O. Note that a molecular formula is always a whole-number multiple of an empirical formula.
Empirical and Molecular FormulasMolecules of glucose (blood sugar) contain 6 carbon atoms, 12 hydrogen atoms, and 6 oxygen atoms. What are the molecular and empirical formulas of glucose?
SolutionThe molecular formula is C6H12O6 because one molecule actually contains 6 C, 12 H, and 6 O atoms. The simplest whole-number ratio of C to H to O atoms in glucose is 1:2:1, so the empirical formula is CH2O.
Check Your LearningA molecule of metaldehyde (a pesticide used for snails and slugs) contains 8 carbon atoms, 16 hydrogen atoms, and 4 oxygen atoms. What are the molecular and empirical formulas of metaldehyde?
Molecular formula, C8H16O4; empirical formula, C2H4O
You’ve learned about the evolution of atomic theory, and you’ve started to explore different chemical structures. These structures result in molecules attracting or repelling each other, or help them arrange into our cell membranes or lead them to either spread into thin films or clump into solid masses.
What do these structures mean to scientists, and to us? Essentially, everything. It’s the structure and makeup of a molecule on a virus surface that allows it to attach to one of our cells, and it’s the structure and makeup of antibodies—substances created by our immune system—that block that attachment. Chlorophyll’s structure enables it to use the sun’s energy to make glucose. Chemists and chemical engineers don’t simply observe and understand these structures—they can create new ones.
Paula Hammond does exactly that to solve challenging problems ranging from cancer to energy consumption. She is the chair of the department of chemical engineering at Massachusetts Institute of Technology, and leads a research team focused on assembling unique molecular structures. They have created cancer drug carriers—nanoparticle-sized coatings that enable medicines to travel into tumors without being affected by its defenses—that can deliver pharmaceuticals directly into cancerous tumors. They build these “stealth” molecules layer by layer; using certain properties of electricity and chemical behavior, they can “tune” the coatings to address particular cancers and other variables. This precision approach is necessary to treat cancers more effectively and with less harm to the patient. The company Hammond founded uses similar technology to release medication into cataract patients’ eyes, as well as to improve wound healing.
While Hammond’s research team is composed of established and leading experts such as herself, students certainly play a role. College research labs are typically full of PhD, graduate, and even undergraduate students who participate in the work. And thus chemists and chemical engineers who use their knowledge to solve problems are also supporting the next generation of creators and problem-solvers.
It is important to be aware that it may be possible for the same atoms to be arranged in different ways: Compounds with the same molecular formula may have different atom-to-atom bonding and therefore different structures. For example, could there be another compound with the same formula as acetic acid, C2H4O2? And if so, what would be the structure of its molecules?
If you predict that another compound with the formula C2H4O2 could exist, then you demonstrated good chemical insight and are correct. Two C atoms, four H atoms, and two O atoms can also be arranged to form a methyl formate, which is used in manufacturing, as an insecticide, and for quick-drying finishes. Methyl formate molecules have one of the oxygen atoms between the two carbon atoms, differing from the arrangement in acetic acid molecules. Acetic acid and methyl formate are examples of isomers—compounds with the same chemical formula but different molecular structures (Figure 2.23). Note that this small difference in the arrangement of the atoms has a major effect on their respective chemical properties. You would certainly not want to use a solution of methyl formate as a substitute for a solution of acetic acid (vinegar) when you make salad dressing.
Many types of isomers exist (Figure 2.24). Acetic acid and methyl formate are structural isomers, compounds in which the molecules differ in how the atoms are connected to each other. There are also various types of spatial isomers, in which the relative orientations of the atoms in space can be different. For example, the compound carvone (found in caraway seeds, spearmint, and mandarin orange peels) consists of two isomers that are mirror images of each other. S-(+)-carvone smells like caraway, and R-(−)-carvone smells like spearmint.
The identity of a substance is defined not only by the types of atoms or ions it contains, but by the quantity of each type of atom or ion. For example, water, H2O, and hydrogen peroxide, H2O2, are alike in that their respective molecules are composed of hydrogen and oxygen atoms. However, because a hydrogen peroxide molecule contains two oxygen atoms, as opposed to the water molecule, which has only one, the two substances exhibit very different properties. Today, we possess sophisticated instruments that allow the direct measurement of these defining microscopic traits; however, the same traits were originally derived from the measurement of macroscopic properties (the masses and volumes of bulk quantities of matter) using relatively simple tools (balances and volumetric glassware). This experimental approach required the introduction of a new unit for amount of substances, the mole, which remains indispensable in modern chemical science.
The mole is an amount unit similar to familiar units like pair, dozen, gross, etc. It provides a specific measure of the number of atoms or molecules in a sample of matter. One Latin connotation for the word “mole” is “large mass” or “bulk,” which is consistent with its use as the name for this unit. The mole provides a link between an easily measured macroscopic property, bulk mass, and an extremely important fundamental property, number of atoms, molecules, and so forth. A mole of substance is that amount in which there are 6.02214076 × 1023 discrete entities (atoms or molecules). This large number is a fundamental constant known as Avogadro's number (NA) or the Avogadro constant in honor of Italian scientist Amedeo Avogadro. This constant is properly reported with an explicit unit of “per mole,” a conveniently rounded version being 6.022 1023/mol.
Consistent with its definition as an amount unit, 1 mole of any element contains the same number of atoms as 1 mole of any other element. The masses of 1 mole of different elements, however, are different, since the masses of the individual atoms are drastically different. The molar mass of an element (or compound) is the mass in grams of 1 mole of that substance, a property expressed in units of grams per mole (g/mol) (see Figure 2.25).
The molar mass of any substance is numerically equivalent to its atomic or formula weight in amu. Per the amu definition, a single 12C atom weighs 12 amu (its atomic mass is 12 amu). A mole of 12C atoms weighs 12 g (its molar mass is 12 g/mol). This relationship holds for all elements, since their atomic masses are measured relative to that of the amu-reference substance, 12C. Extending this principle, the molar mass of a compound in grams is likewise numerically equivalent to its formula mass in amu (Figure 2.26).
|Element||Average Atomic Mass (amu)||Molar Mass (g/mol)||Atoms/Mole|
While atomic mass and molar mass are numerically equivalent, keep in mind that they are vastly different in terms of scale, as represented by the vast difference in the magnitudes of their respective units (amu versus g). To appreciate the enormity of the mole, consider a small drop of water weighing about 0.03 g (see Figure 2.27). Although this represents just a tiny fraction of 1 mole of water (~18 g), it contains more water molecules than can be clearly imagined. If the molecules were distributed equally among the roughly seven billion people on earth, each person would receive more than 100 billion molecules.
The relationships between formula mass, the mole, and Avogadro’s number can be applied to compute various quantities that describe the composition of substances and compounds. For example, if we know the mass and chemical composition of a substance, we can determine the number of moles and calculate number of atoms or molecules in the sample. Likewise, if we know the number of moles of a substance, we can derive the number of atoms or molecules and calculate the substance’s mass.
Deriving Moles from Grams for an ElementAccording to nutritional guidelines from the US Department of Agriculture, the estimated average requirement for dietary potassium is 4.7 g. What is the estimated average requirement of potassium in moles?
SolutionThe mass of K is provided, and the corresponding amount of K in moles is requested. Referring to the periodic table, the atomic mass of K is 39.10 amu, and so its molar mass is 39.10 g/mol. The given mass of K (4.7 g) is a bit more than one-tenth the molar mass (39.10 g), so a reasonable “ballpark” estimate of the number of moles would be slightly greater than 0.1 mol.
The molar amount of a substance may be calculated by dividing its mass (g) by its molar mass (g/mol):
The factor-label method supports this mathematical approach since the unit “g” cancels and the answer has units of “mol:”
The calculated magnitude (0.12 mol K) is consistent with our ballpark expectation, since it is a bit greater than 0.1 mol.
Check Your LearningBeryllium is a light metal used to fabricate transparent X-ray windows for medical imaging instruments. How many moles of Be are in a thin-foil window weighing 3.24 g?
Deriving Grams from Moles for an ElementA liter of air contains 9.2 10−4 mol argon. What is the mass of Ar in a liter of air?
SolutionThe molar amount of Ar is provided and must be used to derive the corresponding mass in grams. Since the amount of Ar is less than 1 mole, the mass will be less than the mass of 1 mole of Ar, approximately 40 g. The molar amount in question is approximately one-one thousandth (~10−3) of a mole, and so the corresponding mass should be roughly one-one thousandth of the molar mass (~0.04 g):
In this case, logic dictates (and the factor-label method supports) multiplying the provided amount (mol) by the molar mass (g/mol):
The result is in agreement with our expectations, around 0.04 g Ar.
Check Your LearningWhat is the mass of 2.561 mol of gold?
Deriving Number of Atoms from Mass for an ElementCopper is commonly used to fabricate electrical wire (Figure 2.28). How many copper atoms are in 5.00 g of copper wire?
SolutionThe number of Cu atoms in the wire may be conveniently derived from its mass by a two-step computation: first calculating the molar amount of Cu, and then using Avogadro’s number (NA) to convert this molar amount to number of Cu atoms:
Considering that the provided sample mass (5.00 g) is a little less than one-tenth the mass of 1 mole of Cu (~64 g), a reasonable estimate for the number of atoms in the sample would be on the order of one-tenth NA, or approximately 1022 Cu atoms. Carrying out the two-step computation yields:
The factor-label method yields the desired cancellation of units, and the computed result is on the order of 1022 as expected.
Check Your LearningA prospector panning for gold in a river collects 15.00 g of pure gold. How many Au atoms are in this quantity of gold?
4.586 1022 Au atoms
Deriving Moles from Grams for a CompoundOur bodies synthesize protein from amino acids. One of these amino acids is glycine, which has the molecular formula C2H5O2N. How many moles of glycine molecules are contained in 28.35 g of glycine?
SolutionWe can derive the number of moles of a compound from its mass following the same procedure we used for an element in Example 2.7:
The molar mass of glycine is required for this calculation, and it is computed in the same fashion as its molecular mass. One mole of glycine, C2H5O2N, contains 2 moles of carbon, 5 moles of hydrogen, 2 moles of oxygen, and 1 mole of nitrogen:
The provided mass of glycine (~28 g) is a bit more than one-third the molar mass (~75 g/mol), so we would expect the computed result to be a bit greater than one-third of a mole (~0.33 mol). Dividing the compound’s mass by its molar mass yields:
This result is consistent with our rough estimate.
Check Your LearningHow many moles of sucrose, C12H22O11, are in a 25-g sample of sucrose?
Deriving Grams from Moles for a CompoundVitamin C is a covalent compound with the molecular formula C6H8O6. The recommended daily dietary allowance of vitamin C for children aged 4–8 years is 1.42 10−4 mol. What is the mass of this allowance in grams?
SolutionAs for elements, the mass of a compound can be derived from its molar amount as shown:
The molar mass for this compound is computed to be 176.124 g/mol. The given number of moles is a very small fraction of a mole (~10−4 or one-ten thousandth); therefore, we would expect the corresponding mass to be about one-ten thousandth of the molar mass (~0.02 g). Performing the calculation, we get:
This is consistent with the anticipated result.
Check Your LearningWhat is the mass of 0.443 mol of hydrazine, N2H4?
Deriving the Number of Atoms and Molecules from the Mass of a CompoundA packet of an artificial sweetener contains 40.0 mg of saccharin (C7H5NO3S), which has the structural formula:
Given that saccharin has a molar mass of 183.18 g/mol, how many saccharin molecules are in a 40.0-mg (0.0400-g) sample of saccharin? How many carbon atoms are in the same sample?
SolutionThe number of molecules in a given mass of compound is computed by first deriving the number of moles, as demonstrated in Example 2.10, and then multiplying by Avogadro’s number:
Using the provided mass and molar mass for saccharin yields:
The compound’s formula shows that each molecule contains seven carbon atoms, and so the number of C atoms in the provided sample is:
Check Your LearningHow many C4H10 molecules are contained in 9.213 g of this compound? How many hydrogen atoms?
9.545 1022 molecules C4 H10; 9.545 1023 atoms H
Counting Neurotransmitter Molecules in the Brain
The brain is the control center of the central nervous system (Figure 2.29). It sends and receives signals to and from muscles and other internal organs to monitor and control their functions; it processes stimuli detected by sensory organs to guide interactions with the external world; and it houses the complex physiological processes that give rise to our intellect and emotions. The broad field of neuroscience spans all aspects of the structure and function of the central nervous system, including research on the anatomy and physiology of the brain. Great progress has been made in brain research over the past few decades, and the BRAIN Initiative, a federal initiative announced in 2013, aims to accelerate and capitalize on these advances through the concerted efforts of various industrial, academic, and government agencies (see BRAIN Initiative website for details).
Specialized cells called neurons transmit information between different parts of the central nervous system by way of electrical and chemical signals. Chemical signaling occurs at the interface between different neurons when one of the cells releases molecules (called neurotransmitters) that diffuse across the small gap between the cells (called the synapse) and bind to the surface of the other cell. These neurotransmitter molecules are stored in small intracellular structures called vesicles that fuse to the cell membrane and then break open to release their contents when the neuron is appropriately stimulated. This process is called exocytosis (see Figure 2.30). One neurotransmitter that has been very extensively studied is dopamine, C8H11NO2. Dopamine is involved in various neurological processes that impact a wide variety of human behaviors. Dysfunctions in the dopamine systems of the brain underlie serious neurological diseases such as Parkinson’s and schizophrenia.
One important aspect of the complex processes related to dopamine signaling is the number of neurotransmitter molecules released during exocytosis. Since this number is a central factor in determining neurological response (and subsequent human thought and action), it is important to know how this number changes with certain controlled stimulations, such as the administration of drugs. It is also important to understand the mechanism responsible for any changes in the number of neurotransmitter molecules released—for example, some dysfunction in exocytosis, a change in the number of vesicles in the neuron, or a change in the number of neurotransmitter molecules in each vesicle.
Significant progress has been made recently in directly measuring the number of dopamine molecules stored in individual vesicles and the amount actually released when the vesicle undergoes exocytosis. Using miniaturized probes that can selectively detect dopamine molecules in very small amounts, scientists have determined that the vesicles of a certain type of mouse brain neuron contain an average of 30,000 dopamine molecules per vesicle (about mol or 50 zmol). Analysis of these neurons from mice subjected to various drug therapies shows significant changes in the average number of dopamine molecules contained in individual vesicles, increasing or decreasing by up to three-fold, depending on the specific drug used. These studies also indicate that not all of the dopamine in a given vesicle is released during exocytosis, suggesting that it may be possible to regulate the fraction released using pharmaceutical therapies.2
- 2Omiatek, Donna M., Amanda J. Bressler, Ann-Sofie Cans, Anne M. Andrews, Michael L. Heien, and Andrew G. Ewing. “The Real Catecholamine Content of Secretory Vesicles in the CNS Revealed by Electrochemical Cytometry.” Scientific Report 3 (2013): 1447, accessed January 14, 2015, doi:10.1038/srep01447.